petBrain
petBrain is a pipeline of processes aimed to automatically analyze MRI and PET brain data. It gets an anonymized MRI and PET brain volumes in NIFTI format and produces a pdf report with A/T/N patient's status.
A/T/N model
petBrain provides standardized biomarker quantification of A, T, and N biomarkers using Centiloid, Centaur and HAVAs.
Be aware that AssemblyNet-AD has been designed only to discriminate AD patients from controls. Please do not use it for other types of pathologies (e.g., Parkinson, Vascular dementia, ...).
Report
Once the process is finished you will be notified by e-mail so you will be able to download a package including some image files and two (CSV and PDF) reports gathering all the dementia scores values calculated.
References
P. Coupé, B. Mansencal, F. Morandat, S. Morell-Ortega, J V. Manjon, N. Villain, V. Planche, petBrain: A New Pipeline for Amyloid, Tau Tangles and Neurodegeneration Quantification Using PET and MRI, To appear.
P. Coupé, B. Mansencal, M. Clément, R. Giraud, B. Denis de Senneville, V.-T Ta, V. Lepetit, J. V. Manjon. AssemblyNet: A large ensemble of CNNs for 3D Whole Brain MRI Segmentation. NeuroImage, 219, 117026, 2020. PDF
de Senneville, B.D., Manjon, J.V. and Coupé, P., 2020. RegQCNET: Deep quality control for image-to-template brain MRI affine registration. Physics in Medicine & Biology, 65(22), p.225022. PDF